Check our work.
Master’s and PhD projects on synthetic clinical data that has to prove itself. Ten topics across privacy, statistics, health informatics, law and regulatory science, each with a question worth publishing.
Independent checks are worth more than our own.
Synthetix Health builds certified synthetic clinical data: artificial patient cohorts produced under formal ε-differential privacy, each released with a certificate that states what it is fit for and what it is not. A guarantee or a utility claim only counts once someone independent has tried to break it. These projects are built for that.
Two supervisors.
A supervisor at Synthetix Health works alongside your academic supervisor, from the research question to the final defence.
Real data, safely.
Public seed data and synthetic releases from day one. Work on real patient records happens only inside a partner’s approved secure environment, with ethics approval.
Agreement first.
Every project runs under a confidentiality and IP agreement with you, and your university where required, signed before work begins.
Publish what you find.
We review drafts only for confidential information, never for results. Negative results are publishable.
Open to students at ten universities.
The programme is selective. We accept applications from master’s and doctoral students enrolled at the universities below, and we ask you to apply with your university email.
- Karolinska Institutet
- KTH Royal Institute of Technology
- Stockholm University
- Uppsala University
- Charité – Universitätsmedizin Berlin
- Technische Universität Berlin
- Humboldt-Universität zu Berlin
- Freie Universität Berlin
- Technical University of Munich
- LMU Munich
This list describes who can apply. It does not imply a partnership with, or endorsement by, any university.
Ten questions worth a thesis.
Eight master’s projects and two PhD directions. Our first clinical focus is diabetes and cardiovascular care, and four projects (M2, M5, M7, M8) are anchored there. Open a topic to read the brief, or download it as a one-page PDF.
M1Red-teaming synthetic clinical dataMembership-inference, reconstruction and linkage attacks against certified synthetic releases.
Privacy · SecurityMaster’s
The question
A synthetic release produced under ε-differential privacy comes with a mathematical ceiling on what any attacker can learn about a real patient. How close do real, well-resourced attacks get to that ceiling, and where does the gap come from?
Why it matters
Formal guarantees are only persuasive to a hospital or an ethics board when someone independent has tried hard to break them. Published attacks on synthetic data show that similarity scores can hide real leakage. An open, reproducible attack harness is the evidence the field is missing.
What you would do
- Survey and implement the main attack families from the literature: shadow-model membership inference, distance-based attacks, attribute inference and record linkage.
- Run them against public-seed releases (CMS DE-SynPUF) at several privacy budgets, with a clear threat model for each attack.
- Compare measured attack advantage against the theoretical bound printed on the release certificate.
- Where a partner’s secure environment and ethics approval allow it, repeat the strongest attacks on releases made from real records, without data leaving the environment.
What you would produce
- An open-source attack harness with documented threat models
- A results report: where attacks come close to the bound, and where they do not
- A publishable paper; negative results count
Good fit if you have
Python, ML fundamentals, some probability. Interest in security or cryptography. Prior work with privacy attacks is a plus, not a requirement.
Suits
KTH (Cybersecurity, ML) · SU (DSV)
M2Same data, same conclusions?Replicating published diabetes and cardiovascular analyses on synthetic cohorts and measuring inference agreement.
Biostatistics · EpidemiologyMaster’s
The question
When a researcher runs a standard cardiometabolic analysis, such as diabetes outcomes or heart-failure survival, on a synthetic cohort instead of the real one, do they reach the same conclusions: the same direction of effect, overlapping confidence intervals, the same curves?
Why it matters
The point of synthetic data in research is that inferences carry over. Most evaluations report distance metrics instead of asking whether the scientific answer changes. A clear protocol for inference agreement is what a research group would accept before trusting a synthetic cohort. We start in diabetes and cardiovascular care because the conditions are common and the analyses are well established.
What you would do
- Select three to five published diabetes and cardiovascular analyses that can be reproduced on public data: risk-factor regression, Kaplan–Meier and Cox survival analysis, comorbidity prevalence.
- Re-run each analysis on the real seed data and on synthetic releases at several privacy budgets.
- Measure agreement: effect-size difference, confidence-interval overlap, sign and significance agreement, curve distance.
- Propose a compact inference-agreement report that could sit on a release certificate.
What you would produce
- A reproducibility protocol other groups can reuse
- Agreement results across analyses and budgets
- A short reporting template for inference agreement
Good fit if you have
R or Python, regression and survival analysis, careful reporting. Epidemiology or biostatistics background.
Suits
KI (Epidemiology, Biostatistics & Data Science) · SU (Statistics)
M3Utility that matches the useWhich fidelity measures actually predict success on which downstream clinical tasks.
Statistics · Machine learningMaster’s
The question
Synthetic data is scored with dozens of fidelity metrics. Which of them predict how well a downstream task performs, and does the answer change between software testing, cohort sizing and model training?
Why it matters
A single utility score invites the wrong reading. Buyers and access bodies need to know which evidence counts for which purpose. Mapping metrics to tasks turns fitness for purpose from a slogan into something measurable.
What you would do
- Catalogue fidelity metrics in common use: marginal divergences, correlation structure, propensity scores, train-synthetic-test-real performance.
- Define a set of downstream tasks of different difficulty on public seed data.
- Measure metric scores and task performance across many synthetic releases and look for which metrics are predictive, and where.
- Recommend a minimal, purpose-specific evidence set.
What you would produce
- A metric-to-task predictiveness study
- A recommended evidence set per purpose
- Open evaluation code
Good fit if you have
Python, statistics, experimental design. Comfortable running many experiments and reasoning about them.
Suits
KTH (ML, Data Science) · SU (Statistics, CS)
M4Interoperable synthetic dataSynthetic cohorts that stay valid against FHIR and OMOP standards.
Health informaticsMaster’s
The question
A synthetic cohort is only usable if it loads into the systems researchers already use. How often do synthetic records violate FHIR profiles, OMOP CDM conventions and basic clinical plausibility, and how should that be tested and reported?
Why it matters
Hospitals and research platforms run on standards. Structural errors in synthetic data waste analysts’ time and erode trust faster than statistical gaps. A standard conformance suite is a practical, reusable contribution.
What you would do
- Assemble a conformance suite: FHIR profile validation, OMOP data-quality checks (e.g. OHDSI tooling), referential integrity and clinical plausibility rules.
- Apply it to synthetic releases and to their public seed data as a baseline.
- Classify the violations found and how they affect downstream use.
- Propose a conformance section for a release certificate.
What you would produce
- An open conformance test suite
- A violation taxonomy with examples
- A reporting format for interoperability
Good fit if you have
Health data standards (FHIR, OMOP) or willingness to learn them quickly; SQL and Python.
Suits
KI / SU (Health Informatics) · KTH (Medical Engineering)
M5Who pays for privacy?Measuring and reporting subgroup-level utility in private synthetic data for diabetes and cardiovascular patients.
Statistics · Public healthMaster’s
The question
Under a fixed privacy budget, does synthetic data serve some cardiometabolic patients worse than others, such as younger people with type 2 diabetes, women with heart disease, or older patients with several conditions? How should that be measured and shown to the people relying on the data?
Why it matters
Published work shows that privacy noise can land hardest on small subgroups, and most medical studies do not report subgroup results at all. Regulators and the EU AI Act increasingly ask for subgroup evidence. Measuring it honestly is a design requirement for release documentation.
What you would do
- Define subgroups among diabetes and cardiovascular patients in public seed data (age, sex, region, comorbidity) and a set of subgroup-level fidelity and inference measures.
- Measure subgroup gaps across synthetic releases at several privacy budgets.
- Relate the gaps to subgroup size and to the downstream tasks affected.
- Propose a subgroup section for a release certificate.
What you would produce
- A subgroup-utility benchmark on public data
- Analysis of which groups lose most, and when
- A reporting template for subgroup results
Good fit if you have
Statistics, R or Python, interest in equity and fairness in health research.
Suits
KI (Public Health, Epidemiology) · KTH (ML)
M6What makes a release adequate?Criteria a Health Data Access Body could apply to synthetic outputs under the EHDS, GDPR and the AI Act.
Law · PolicyMaster’s
The question
When is a synthetic dataset anonymous enough, and documented well enough, to be released under the European Health Data Space? What should an access body be able to check?
Why it matters
EHDS access bodies will have to approve or refuse synthetic outputs, yet there is no agreed standard for what adequate means. GDPR anonymity, the AI Act’s data-governance rules and EHDS secondary-use rules each pull in a different direction. A clear set of criteria is useful to regulators and to every producer.
What you would do
- Map the relevant provisions: GDPR anonymisation, EHDS secondary use, AI Act data governance, relevant EDPB guidance.
- Analyse how formal privacy guarantees and empirical risk assessments fit those provisions.
- Compare approaches in two or three member states or authorities.
- Propose checkable adequacy criteria, including what a release should state it must not be used for.
What you would produce
- A doctrinal and comparative analysis
- Proposed adequacy criteria for access bodies
- A policy brief suitable for publication
Good fit if you have
EU law, data protection law. Comfort reading technical summaries; no programming needed.
Suits
SU (Law & IT, European law) · KI (Health policy)
M7Validation inside the firewallA protocol for evaluating synthetic data in a hospital’s secure environment, where raw records never leave.
Health informatics · ImplementationMaster’s
The question
What does it take for a diabetes or cardiology clinic to host a synthetic-data validation, so that raw patient records stay inside its environment and only synthetic data and evaluation results come out?
Why it matters
The strongest evidence for synthetic data comes from real clinical records. We start in cardiometabolic care, at a diabetes or cardiology clinic, with oncology as a later stage. Hospitals will only take part if governance is clear: ethics approval, DPIA, roles, access controls and exit criteria. A tested protocol lowers the barrier for the first sites.
What you would do
- Review existing secure-processing models (e.g. trusted research environments, MONA-style remote access) and Swedish requirements.
- Interview data stewards, ethics and IT security staff about their conditions for participating.
- Draft a step-by-step validation protocol: approvals, roles, what runs inside, what may leave, stop criteria.
- Pilot the protocol end-to-end on public cardiometabolic data in a simulated environment.
What you would produce
- A governance and validation protocol hospitals can review
- Interview findings on adoption barriers
- Checklists and templates for a first site
Good fit if you have
Health informatics or health systems background; interviewing and qualitative analysis; basic technical literacy.
Suits
KI (LIME, Health Informatics) · KTH (Health systems)
M8Synthetic data across drug developmentWhat evidence counts at each stage, followed through one cardiometabolic therapy area from discovery to regulatory submission.
Regulatory science · BioentrepreneurshipMaster’s
The question
Where in the drug-development pipeline for cardiometabolic disease can certified synthetic data be used today, and what evidence would a pharma team, an ethics board or a regulator need at each stage?
Why it matters
Synthetic data is discussed for discovery, trial feasibility and synthetic control arms, but expectations differ sharply by stage. EMA and FDA statements give partial guidance. A clear stage-by-stage evidence map helps companies and research institutes decide where to start.
What you would do
- Pick one cardiometabolic therapy area, such as type 2 diabetes or heart failure, and map its stages: target discovery, cohort and feasibility analysis, trial design, external comparators, post-market.
- Review EMA, FDA and Nordic guidance and published use cases at each stage.
- Interview people in Nordic pharma, CROs and research institutes about what they would accept.
- Build an evidence ladder: which uses are ready, which need more validation, which are not appropriate.
What you would produce
- A stage-by-stage evidence map
- Interview insights from industry
- Recommendations for early adoption pathways
Good fit if you have
Life-science background; interest in regulation and business; interviewing and synthesis.
Suits
KI (Bioentrepreneurship, Regulatory science) · SU
P1Auditable privacy for clinical synthetic dataClosing the gap between formal guarantees and what attacks achieve in practice.
Privacy · SecurityPhD direction
The question
Can we build audit methods that let an independent party verify, with statistical confidence, that a synthetic clinical release behaves as its stated privacy guarantee says, without seeing the producer’s internals?
Why it matters
Privacy auditing is an active research area, but clinical synthetic data has its own structure, such as linked tables and coded clinical events. Third-party verifiability is what turns a vendor claim into a trust standard.
What you would do
- Develop and evaluate black-box audit methods for synthetic tabular and relational clinical data.
- Study how tight empirical lower bounds on privacy loss can be made for realistic data.
- Validate on public data and, where approved, inside partner secure environments.
- Publish open audit tooling.
What you would produce
- A research programme of three to four papers
- Open audit tooling
- Collaboration across academia, hospitals and industry
Good fit if you have
Strong background in ML, statistics or security; master’s degree in a relevant field.
Suits
KTH · SU · co-supervised
P2Fit-for-purpose evidence for synthetic dataFrom inference reproducibility to regulatory acceptance in clinical research.
Epidemiology · Regulatory sciencePhD direction
The question
What body of evidence should be required before synthetic clinical data is used for a given research purpose, and how can that evidence be standardised so registries, access bodies and regulators accept it?
Why it matters
There is no reporting guideline for synthetic health data comparable to those for trials or observational studies. Sweden’s registers and secure environments make it an unusually good place to build and test one.
What you would do
- Systematically review evaluation practice and existing reporting guidelines.
- Run reproducibility studies on public and, where approved, register-based data.
- Develop and test a reporting guideline through consensus methods with clinicians, statisticians and regulators.
- Study adoption in real research projects.
What you would produce
- A proposed reporting guideline
- A series of reproducibility studies
- Evidence on adoption and acceptance
Good fit if you have
Epidemiology or biostatistics master’s; interest in research methods and regulation.
Suits
KI · co-supervised
Timing, place and support.
Rolling.
We review applications as they arrive and aim to reply within two weeks.
Spring or autumn 2027.
Master’s projects run 20 weeks (30 credits) from January or August. A project starts once the thesis agreement is signed.
Stockholm or hybrid.
Work from Solna, from your own university, or a mix. Master’s projects include a completion stipend, agreed per project.
Before you apply.
01Can I propose my own topic?
Yes. Choose “Own proposal” in the form and describe your question in the motivation field. It should test, measure or govern synthetic clinical data.
02My university is not listed.
The form only accepts addresses from the listed universities. If you have an exceptional case, write to gaurav@synthetixhealth.com with a short note.
03Can PhD students apply?
Yes, for the two PhD directions. We are an early-stage company and cannot fund a PhD position alone. These are directions for a co-supervised project if a research group and funding, for example an industrial doctorate, align.
04What language is the work in?
English. Swedish or German helps for projects that involve interviews or local regulation, but it is not required.
05Who owns the results?
Terms are set in the confidentiality and IP agreement before work begins. Your thesis remains yours to submit and publish. We review drafts only for confidential information.
Apply for a thesis.
Tell us who you are, which topic you want and why. Please use your university email. We reply to every application.
Your application is stored only to assess it, as described in our privacy policy.